Package: rvHPDT 4.0

rvHPDT: Calling Haplotype-Based and Variant-Based Pedigree Disequilibrium Test for Rare Variants in Pedigrees

To detecting rare variants for binary traits using general pedigrees, the pedigree disequilibrium tests are proposed by collapsing rare haplotypes/variants with/without weights. To run the test, MERLIN is needed in Linux for haplotyping.

Authors:Wei Guo <[email protected]>

rvHPDT_4.0.tar.gz
rvHPDT_4.0.zip(r-4.7)rvHPDT_4.0.zip(r-4.6)rvHPDT_4.0.zip(r-4.5)
rvHPDT_4.0.tgz(r-4.6-any)rvHPDT_4.0.tgz(r-4.5-any)
rvHPDT_4.0.tar.gz(r-4.7-any)rvHPDT_4.0.tar.gz(r-4.6-any)
rvHPDT_4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rvHPDT/json (API)

# Install 'rvHPDT' in R:
install.packages('rvHPDT', repos = c('https://weiguonimh.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/weiguonimh/rvhpdt/issues

On CRAN:

Conda:

2.00 score 2 scripts 199 downloads 1 mentions 12 exports 1 dependencies

Last updated from:573d948af8. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK99
source / vignettesOK167
linux-release-x86_64OK101
macos-release-arm64OK114
macos-oldrel-arm64OK127
windows-develOK78
windows-releaseOK78
windows-oldrelOK70
wasm-releaseOK93

Exports:convert.factors.to.strings.in.dataframefullPedigreeHapMendlianCheckmydaoshumypasterandomPDTrchildrhapPDTrvPDT.testrvPDT.test.permurvPDT.test.subwhap.prehap

Dependencies:gtools