{
  "_id": "6a227eabcd65a98ecbd50877",
  "Package": "postGGIR",
  "Version": "2.4.0.2",
  "Date": "2022-01-06",
  "Title": "Data Processing after Running 'GGIR' for Accelerometer Data",
  "Authors@R": "c(\nperson(given = \"Wei\", family = \"Guo\",\nrole = c(\"aut\", \"cre\"), email = \"wei.guo3@nih.gov\"),\nperson(given = \"Andrew\", family = \"Leroux\",\nrole = c(\"aut\"), email = \"andrew.leroux@cuanschutz.edu\"),\nperson(given = \"Vadim\", family = \"Zipunnikov\",\nrole = c(\"aut\"), email = \"vzipunni@jhsph.edu\"),\nperson(given = \"Kathleen\", family = \"Merikangas\",\nrole = c(\"aut\"), email = \"merikank@mail.nih.gov\")\n)",
  "Maintainer": "Wei Guo <wei.guo3@nih.gov>",
  "Description": "Generate all necessary R/Rmd/shell files for data\nprocessing after running 'GGIR' (v2.4.0) for accelerometer\ndata. In part 1, all csv files in the GGIR output directory\nwere read, transformed and then merged. In part 2, the GGIR\noutput files were checked and summarized in one excel sheet. In\npart 3, the merged data was cleaned according to the number of\nvalid hours on each night and the number of valid days for each\nsubject. In part 4, the cleaned activity data was imputed by\nthe average Euclidean norm minus one (ENMO) over all the valid\ndays for each subject. Finally, a comprehensive report of data\nprocessing was created using Rmarkdown, and the report includes\nfew exploratory plots and multiple commonly used features\nextracted from minute level actigraphy data.",
  "URL": "https://github.com/dora201888/postGGIR",
  "BugReports": "https://github.com/dora201888/postGGIR/issues",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "ByteCompile": "true",
  "Type": "Package",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.2",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-05 07:33:18 UTC",
    "User": "root"
  },
  "Author": "Wei Guo [aut, cre], Andrew Leroux [aut], Vadim Zipunnikov\n[aut], Kathleen Merikangas [aut]",
  "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev make libharfbuzz-dev default-jdk libicu-dev\nlibpng-dev libuv1-dev libxml2-dev zlib1g-dev",
  "Repository": "https://weiguonimh.r-universe.dev",
  "Date/Publication": "2022-01-06 13:30:02 UTC",
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  "_created": "2026-06-05T07:33:18.000Z",
  "_published": "2026-06-05T07:45:47.649Z",
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      ]
    },
    {
      "page": "ActCosinor2",
      "title": "Cosinor Model for Circadian Rhythmicity",
      "topics": [
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    {
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    {
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      "title": "Extended Cosinor Model for Circadian Rhythmicity",
      "topics": [
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      ]
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    {
      "page": "afterggir",
      "title": "Main Call for Data Processing after Runing GGIR for Accelerometer Data",
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    {
      "page": "bin_data2",
      "title": "Bin data into longer windows",
      "topics": [
        "bin_data2"
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    },
    {
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      "title": "Create a template shell script of postGGIR",
      "topics": [
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      "title": "Fragmentation Metrics for Whole Dataset",
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      "title": "Description of all accelerometer files in the GGIR output",
      "topics": [
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      "topics": [
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      "title": "Relative Amplitude for the Whole Datset",
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      "title": "Relative Amplitude",
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      "title": "Create Wear/Nonwear Flags",
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      "title": "postGGIR",
      "author": "Wei Guo",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "What is GGIR?",
        "What is postGGIR?",
        "Software Architecture",
        "",
        "Software Dependencies",
        "Setting up your work environment",
        "Install R and RStudio",
        "Prepare folder structure",
        "Quick start",
        "Create a template shell script of postGGIR",
        "Edit shell script",
        "1. Define the function filename2id( )",
        "2. Parameters of shell script",
        "3. Subset of samples (optional)",
        "Run R script",
        "Run script in a cluster",
        "Software Functionalities",
        "Part 1",
        "Part 2",
        "Part 3 and Part 4",
        "Part 5",
        "Part 6 (Optional)",
        "Part 7",
        "Running postGGIR and Inspecting the results",
        "Input and output of part 0",
        "Input and output of part 1",
        "Input and output of part 2",
        "Input and output of part 3",
        "Input and output of part 4",
        "Description of flag variables in the output data",
        "Input and output of part 5",
        "Input and output of part 6",
        "Input and output of part 7a",
        "Input and output of part 7b",
        "Input and output of part 7c",
        "Input and output of part 7d",
        "Description of features of domains of physical activity, sleep and circadian rhythmicity",
        "Reference"
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      "modified": "2022-01-06 13:30:02",
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